PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.9NG207100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 400aa    MW: 43593.8 Da    PI: 6.125
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.9NG207100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.3e-103263661055
                          HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          ++RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Pavir.9NG207100.1.p 326 KKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 366
                          9******************97.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-14314382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.13E-11314370No hitNo description
PROSITE profilePS5088815.205316365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-12316379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-10322371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-7326366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MCTSSRVPVN TWRAAITTVH PQPGGSISLM MIMFLTSATL VGFFNLVFSI NTPLTAHIFP  60
SPSTSNSTAQ ASYHFYYLSH PLLIAMESGG VIAEAGWSVV GMASQAEESE IMEQLLGTFP  120
SNCEEGDQEF PWPIQASNAS YSHCNASSST YSSTNSNGSG SPTFVVPSEY GGYYLSNSNE  180
ALHLNFCTAP MHLHMDQEQG AAQFMDTILN PHGSSDSSGE DLGDSGMNLL DSIGASVKRK  240
HLEQGNLDGP TRSRKWARKS DSKRVKKTIQ RELQDGGVAA NGQSSSCCTF ENDSNAFRGP  300
PVAANLNCKV QADRRSATES QSLYAKKRRE RINERLRILQ NLVPNGTKVD ISTMLEEAVQ  360
YVKFLQLQIK LLSSDEMWMY APIAYNGMNI GIDLNLSQH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004986376.11e-172PREDICTED: transcription factor bHLH139-like
TrEMBLK4AII31e-172K4AII3_SETIT; Uncharacterized protein
STRINGSi038695m1e-172(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43103270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-36bHLH family protein